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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58329308_58330083_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
58329308 - 58330083
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
CTTTTGGGGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTCTCTAAGACT
Flanking Amino Acid:
CAVVCIQKADIFMFDEPSSY
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
73.5
38
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
61
0.25
1.1
61.5
44.5
Minor 5ss
58.2
0.28
2.3
70.9
39.7
Minor BPS
50.6
0.1
2
75.61
41.6

Associated Gene:

Gene:
ABCE1
Ensembl Gene ID:
ENSAPLG00000010315
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010167
58323380 - 58447579
124200
ENSAPLT00000010834
58323380 - 58334912
11533