About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58332256_58332420_F


Intron Information:

Intron Rank:
12

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
58332256 - 58332420

Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACA|GTATGTTTA

5'SS Class:
weak_major

3'SS Sequence:
TCTATTTTGATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTCTAT

U12 Branch Point Sequence:
TCTATTTTGATA

Flanking Amino Acid:
KPQKISPKSTGSVRQLLHEK

Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.6
0.49
1.1
70.8
35.6

Major BPS
73.8
0.59
1.3
72.8
43

Major PPT
74.6
0.55
1
72.3
37.8

Minor 5ss
57.3
0.25
2.3
71.8
39.2

Minor BPS
59.3
0.29
1.2
65.54
35.3

Associated Gene:

Gene:
ABCE1

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

58323380 - 58334912
11533

58323380 - 58447579
124200