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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58332988_58334017_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58332988 - 58334017
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CCTCTCCTAACA
Flanking Amino Acid:
GVPSKNTVANSPQTLLAGMN
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
74.2
0.54
0.9
69.1
30
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
55.2
0.16
1.7
64.87
41.6

Associated Gene:

Gene:
ABCE1
Ensembl Gene ID:
ENSAPLG00000010315
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010834
58323380 - 58334912
11533