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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58334130_58334371_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58334130 - 58334371
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ACTATTTTAAGT
Flanking Amino Acid:
PRINKLNSIKDVEQKKSGNY
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
56.1
0.27
1.7
69.95
41.5

Associated Gene:

Gene:
ABCE1
Ensembl Gene ID:
ENSAPLG00000010315
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010834
58323380 - 58334912
11533