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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58338367_58339820_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58338367 - 58339820
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTTCAAATGACC
Flanking Amino Acid:
LRFFFNLGVKAYSCPMWVPH
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82.1
0.72
0.8
76.2
32.4
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
44.4
-0.4
2
60.13
38

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662