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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58340868_58341902_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58340868 - 58341902
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAGA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGAAATAAAACT
Flanking Amino Acid:
PSEPTTYGPAGIPAQIPASS
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.7
40.1
Major BPS
62
0.3
1
62.3
30.4
Major PPT
77.6
0.62
1
73.5
41.9
Minor 5ss
28.3
-2.5
2.7
32.6
41.6
Minor BPS
42.7
-0.4
2
60.57
42.4

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662