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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58342589_58343139_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58342589 - 58343139
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGTTTCTAACT
Flanking Amino Acid:
SQKLEPNSSEKNSQDERCPK
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.5
0.44
0.9
66.6
39.7
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
59.5
0.38
1.7
75.52
41.8

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662