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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58343196_58345195_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58343196 - 58345195
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
GGTTCATTTACT
Flanking Amino Acid:
TAEVEEQKDKESNSRQIHLS
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
75.4
0.57
1
67.9
42.5
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
60.6
0.41
2
79.57
41.5

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662