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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58346416_58347493_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58346416 - 58347493
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
APGRNPSQSGRKPDRERTED
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.7
0.87
0.6
84.5
23.4
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662