Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58347956_58348894_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58347956 - 58348894

Intron Length:

939

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTGTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCATCAT

U12 Branch Point Sequence:

TCTTCCTCCATC

Flanking Amino Acid:

VIVFVEELGEKHSVSLKSLK

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

63.3

0.33

1.2

65.6

39.7

Major PPT

81.9

0.72

0.8

77.2

37.1

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

56.4

0.18

70.19

41.8

Associated Gene:

Gene:

OTUD4

Ensembl Gene ID:

ENSAPLG00000011619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012137

58336375 - 58364036

27662