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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58348996_58350162_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58348996 - 58350162
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
MQYSVGDKCKVRLDHNGKFY
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
81.9
0.72
0.6
81.5
23.5
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662