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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58350576_58350952_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58350576 - 58350952
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTCATA
Flanking Amino Acid:
NGLKSLSGNKHLKSNGNPTL
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
81.6
31.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.3
0.64
0.9
73.2
36.2
Minor 5ss
45.5
-0.5
2.5
60.1
44.4
Minor BPS
50.8
0.02
1.9
69.44
37.2

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662