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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58351011_58352708_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58351011 - 58352708
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAC
U12 Branch Point Sequence:
TCTGCTATCACT
Flanking Amino Acid:
SASDSEDDSYRSKTTTVGDM
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
66
0.4
1.1
69.4
35.8
Major PPT
89.2
0.88
0.7
84.5
30.4
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
48.6
-0
2.1
72
45.3

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662