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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58352854_58353677_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58352854 - 58353677
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCCCCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTCCTGCCACT
Flanking Amino Acid:
EYSERAALCQSLLYELLYEK
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.5
0.69
0.7
72.4
32.3
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
42.2
-0.5
2.4
66.22
44.4

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662