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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58357283_58358251_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58357283 - 58358251
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTGAACTGAATT
Flanking Amino Acid:
DYLKCLENPQEWVGQVEISA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
80
0.67
0.9
74.5
34.1
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
56.7
0.29
1.7
74.93
41.6

Associated Gene:

Gene:
OTUD4
Ensembl Gene ID:
ENSAPLG00000011619
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012137
58336375 - 58364036
27662