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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58457529_58460178_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58457529 - 58460178
Intron Length:
2650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATACTT
Flanking Amino Acid:
SDPGSPFQMPADTPPPAYLP
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75
0.56
0.9
74.7
34.1
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
61.1
0.43
1.9
84.42
36.8

Associated Gene:

Gene:
SMAD1
Ensembl Gene ID:
ENSAPLG00000012107
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012628
58444352 - 58468900
24549