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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58464078_58466120_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58464078 - 58466120
Intron Length:
2043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTCATCTAACC
Flanking Amino Acid:
IENTRRHIGKGVHLYYVGGE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.1
0.75
0.8
74.1
36
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
52
0.04
1.8
68.38
36.3

Associated Gene:

Gene:
SMAD1
Ensembl Gene ID:
ENSAPLG00000012107
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012628
58444352 - 58468900
24549