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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58466378_58468179_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58466378 - 58468179
Intron Length:
1802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
CTTTCCCCACTT
Flanking Amino Acid:
MCTLRMSFVKGWGAEYHRQD
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
71.3
0.53
1
61.3
37
Major PPT
81.8
0.72
0.9
72.8
42.2
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
48
-0
2.1
72.68
44.5

Associated Gene:

Gene:
SMAD1
Ensembl Gene ID:
ENSAPLG00000012107
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012628
58444352 - 58468900
24549