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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58490588_58491678_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58490588 - 58491678
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTAGTCTT
5'SS Class:
major
3'SS Sequence:
ATGTGATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATTTTCCTAATG
Flanking Amino Acid:
NQGKPLAFRVGLSGPPGAGK
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
73.9
42.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
62.7
0.29
1
60.6
44.4
Minor 5ss
36.1
-1.6
2.9
44.1
43
Minor BPS
63.1
0.27
1.7
70.09
37.3

Associated Gene:

Gene:
MMAA
Ensembl Gene ID:
ENSAPLG00000012279
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012793
58490112 - 58495868
5757