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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58491802_58493174_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
58491802 - 58493174
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTAAATGTTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATAATTTAATA
Flanking Amino Acid:
AVDPSSSTSGGSLLGDKTRM
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
55.7
0.13
1.2
56.7
47.3
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
57.9
0.24
1.5
64.87
35

Associated Gene:

Gene:
MMAA
Ensembl Gene ID:
ENSAPLG00000012279
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012793
58490112 - 58495868
5757