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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58494629_58495580_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58494629 - 58495580
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGAATCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTCTTCTGAATC
Flanking Amino Acid:
RKRSKVWRPKVMRISAKTGE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
61.8
0.27
1
55.1
39.8
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
68.4
0.56
1.4
74.51
36.5

Associated Gene:

Gene:
MMAA
Ensembl Gene ID:
ENSAPLG00000012279
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012793
58490112 - 58495868
5757