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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58523770_58525124_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58523770 - 58525124
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTTTCTTAAG
Flanking Amino Acid:
KCHTVPTGGLKHPEEPEEI*
Intron Amino Acid Position:
1068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
79
0.72
1
69
38.9
Major PPT
85.4
0.8
0.9
91.3
20.9
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
46.2
-0.4
2.1
60.61
41.1

Associated Gene:

Gene:
ZNF827
Ensembl Gene ID:
ENSAPLG00000012322
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012839
58523709 - 58621659
97951