Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58528326_58529799_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58528326 - 58529799

Intron Length:

1474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGACC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TACTCTTGAATT

Flanking Amino Acid:

SDGKKHPYYYSCHVCGFETE

Intron Amino Acid Position:

889

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

75.6

33.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.7

0.67

0.8

73.3

31.7

Minor 5ss

28.1

-2.5

34.6

41.4

Minor BPS

66.9

0.61

1.4

77.76

Associated Gene:

Gene:

ZNF827

Ensembl Gene ID:

ENSAPLG00000012322

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042992

58518229 - 58621659

103431

ENSAPLT00000012839

58523709 - 58621659

97951