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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58550913_58555449_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58550913 - 58555449
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTGTTTACAA
Flanking Amino Acid:
NKDNTIRTTASPFFSEDTFR
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.9
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.8
0.58
0.8
70.5
30
Minor 5ss
34.9
-1.7
2.8
43.6
43.5
Minor BPS
52.1
0.06
2.1
71.99
40.5

Associated Gene:

Gene:
ZNF827
Ensembl Gene ID:
ENSAPLG00000012322
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042992
58518229 - 58621659
103431
ENSAPLT00000012839
58523709 - 58621659
97951