Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58591388_58595860_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58591388 - 58595860

Intron Length:

4473

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGATA

5'SS Class:

strong_major

3'SS Sequence:

CCCTTCTGCTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAA

U12 Branch Point Sequence:

TGTAAAGGATCC

Flanking Amino Acid:

KGRASKPTSTASEEEGGKPF

Intron Amino Acid Position:

352

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

80.5

33.7

Major BPS

62.9

0.32

1.2

65.3

38.6

Major PPT

61.5

0.26

1.1

66.3

33.4

Minor 5ss

41.9

-0.9

3.1

56.7

47.6

Minor BPS

33.9

-1.2

2.3

47.49

40.9

Associated Gene:

Gene:

ZNF827

Ensembl Gene ID:

ENSAPLG00000012322

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042992

58518229 - 58621659

103431

ENSAPLT00000012839

58523709 - 58621659

97951