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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58674836_58677399_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58674836 - 58677399
Intron Length:
2564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TCACTACCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TCACTGTTAAAC
Flanking Amino Acid:
VKLNSGVDYRGVLACLDGYM
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.5
0.55
0.9
70.6
34.9
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
47
-0.2
2.1
57.42
41

Associated Gene:

Gene:
LSM6
Ensembl Gene ID:
ENSAPLG00000012594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013122
58674742 - 58678775
4034