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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58677514_58678749_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
58677514 - 58678749
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTCCT
5'SS Class:
major
3'SS Sequence:
AAGTAGGCAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TCTGGTGTCACC
Flanking Amino Acid:
YGDAFIRGNNDACCRMGN*
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
68
42.9
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
41
-0.5
1.7
32.6
40.3
Minor 5ss
42.5
-0.8
2.9
57.1
41.2
Minor BPS
38.7
-0.9
2.6
52.59
45.8

Associated Gene:

Gene:
LSM6
Ensembl Gene ID:
ENSAPLG00000012594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013122
58674742 - 58678775
4034