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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58689651_58691529_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58689651 - 58691529
Intron Length:
1879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
TATCTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TATCTTTTAACA
Flanking Amino Acid:
PDQPIGDIKFFISVVQSYFV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69.1
35
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.8
0.69
0.9
77.2
35.4
Minor 5ss
36.3
-1.5
3
48
41.5
Minor BPS
73.7
0.74
1.1
77.61
32.4

Associated Gene:

Gene:
REELD1
Ensembl Gene ID:
ENSAPLG00000012613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013126
58688103 - 58696138
8036