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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58710662_58713013_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58710662 - 58713013
Intron Length:
2352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TCCCTGTTCACA
Flanking Amino Acid:
IKSWMVSRQKALKLTRQPKV
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
76.5
0.6
0.8
70.7
33.5
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
43.9
-0.4
2.3
55.35
44.1

Associated Gene:

Gene:
SLC10A7
Ensembl Gene ID:
ENSAPLG00000012487
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013023
58710617 - 58851126
140510