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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58730525_58733473_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58730525 - 58733473
Intron Length:
2949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CCAATTTTACCT
Flanking Amino Acid:
KFSLIVIVFIIFSVQMSFMF
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
48.5
-0
1.7
60.12
44

Associated Gene:

Gene:
SLC10A7
Ensembl Gene ID:
ENSAPLG00000012487
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013023
58710617 - 58851126
140510