About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58757855_58802944_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58757855 - 58802944
Intron Length:
45090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
IFNSAFGSFLGIVVTPLLLL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
SLC10A7
Ensembl Gene ID:
ENSAPLG00000012487
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013023
58710617 - 58851126
140510