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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58837987_58842595_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58837987 - 58842595
Intron Length:
4609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
GGAACATAAAAT
Flanking Amino Acid:
ITPINEWLLKGLQTVGCMPP
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.1
36.6
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
41.9
-0.9
3.1
48.8
47.3
Minor BPS
44.1
-0.3
2
58.43
43.2

Associated Gene:

Gene:
SLC10A7
Ensembl Gene ID:
ENSAPLG00000012487
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013023
58710617 - 58851126
140510