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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58847898_58851026_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58847898 - 58851026
Intron Length:
3129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTCTCTGTATTT
Flanking Amino Acid:
RLEPAVGVKGGPLKPEITIT
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
79
0.65
0.8
77.1
36.8
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
49.8
0.06
2.2
74.81
43.2

Associated Gene:

Gene:
SLC10A7
Ensembl Gene ID:
ENSAPLG00000012487
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013023
58710617 - 58851126
140510