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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58883701_58885024_F

Intron Information:

Intron Rank:
138906
Intron Class:
major
Intron Phase:
Intron Coordinates:
58883701 - 58885024
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTACCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTGTTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
75.3
34
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
72.7
0.51
0.9
65.7
35
Minor 5ss
20.7
-3.4
3.8
30.5
42.8
Minor BPS
64.4
0.53
1.8
78.77
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024784
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032662
58883598 - 58887370
3773