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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58890193_58935956_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58890193 - 58935956
Intron Length:
45764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTTTTTGTAATA
Flanking Amino Acid:
SDMCTDPLTVELDKETSDSE
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72
39.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72.9
0.51
1
67.7
41.6
Minor 5ss
34.1
-1.8
3.3
49.3
46.4
Minor BPS
56.6
0.2
2
70.9
36

Associated Gene:

Gene:
TTC29
Ensembl Gene ID:
ENSAPLG00000012616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048435
58890129 - 59011785
121657
ENSAPLT00000026429
58890129 - 59162993
272865
ENSAPLT00000017621
58890129 - 59011658
121530