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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58936189_58940460_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58936189 - 58940460
Intron Length:
4272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTTCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCCCT
Flanking Amino Acid:
VLLGNIYNERGNYNKAFEYF
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
77.2
0.61
0.9
73
37.3
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
47.6
-0.1
3.6
86.99
39.2

Associated Gene:

Gene:
TTC29
Ensembl Gene ID:
ENSAPLG00000012616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026429
58890129 - 59162993
272865
ENSAPLT00000017621
58890129 - 59011658
121530
ENSAPLT00000013129
58899006 - 59011785
112780
ENSAPLT00000048435
58890129 - 59011785
121657