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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58945452_58960985_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58945452 - 58960985
Intron Length:
15534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TCCTGCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGAGT
Flanking Amino Acid:
FAGEEKTALSILNTSVKIFT
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.3
0.62
0.8
71.2
33.2
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
54.8
0.23
1.9
76.69
39.8

Associated Gene:

Gene:
TTC29
Ensembl Gene ID:
ENSAPLG00000012616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017621
58890129 - 59011658
121530
ENSAPLT00000013129
58899006 - 59011785
112780
ENSAPLT00000048435
58890129 - 59011785
121657
ENSAPLT00000026429
58890129 - 59162993
272865