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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5895613_5896264_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5895613 - 5896264
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGAGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATATGGTTAACG
Flanking Amino Acid:
ACDCLELHSRDLGAEMEDMD
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
56.7
0.15
1.1
50.7
41.7
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
49.1
-0.2
2.5
62.51
45.2

Associated Gene:

Gene:
ENPEP
Ensembl Gene ID:
ENSAPLG00000012392
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045830
5895021 - 5929112
34092