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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58991148_59005321_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58991148 - 59005321
Intron Length:
14174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TTCTTATTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTC
Flanking Amino Acid:
IKGLSKQEAAANRNSYKENI
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.4
60.6
46.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84
0.77
0.8
77
36.2
Minor 5ss
40.5
-1.1
2.8
44.8
43.4
Minor BPS
66.4
0.49
1.6
73.26
38.6

Associated Gene:

Gene:
TTC29
Ensembl Gene ID:
ENSAPLG00000012616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026429
58890129 - 59162993
272865
ENSAPLT00000017621
58890129 - 59011658
121530
ENSAPLT00000013129
58899006 - 59011785
112780
ENSAPLT00000048435
58890129 - 59011785
121657