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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59009366_59079896_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
59009366 - 59079896
Intron Length:
70531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
GCGTTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CATTGTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
71.7
0.49
1
69.2
41.8
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
54.8
0.15
1.9
65.36
41.2

Associated Gene:

Gene:
TTC29
Ensembl Gene ID:
ENSAPLG00000012616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026429
58890129 - 59162993
272865