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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5901904_5904374_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5901904 - 5904374
Intron Length:
2471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCAAATTAATT
Flanking Amino Acid:
YEALANMPVQQTVQVEDGWN
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.5
0.71
0.8
75.7
32.8
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
50.7
0.1
1.8
69.56
41.1

Associated Gene:

Gene:
ENPEP
Ensembl Gene ID:
ENSAPLG00000012392
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012977
5896279 - 5929112
32834
ENSAPLT00000045830
5895021 - 5929112
34092