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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59206607_59219148_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59206607 - 59219148
Intron Length:
12542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTGTTTAAATA
Flanking Amino Acid:
VIDIPIIVYKLLAQQWPFGD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.9
0.67
0.7
78.2
29.9
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
51.9
0.06
1.7
64.17
37.3

Associated Gene:

Gene:
EDNRA
Ensembl Gene ID:
ENSAPLG00000012799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013358
59206131 - 59236238
30108