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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59219277_59226687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59219277 - 59226687
Intron Length:
7411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGGACACTAATG
Flanking Amino Acid:
VLNLCALSVDRYRAVASWSR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
45.3
-0.4
2
51.17
42.8

Associated Gene:

Gene:
EDNRA
Ensembl Gene ID:
ENSAPLG00000012799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013358
59206131 - 59236238
30108