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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59226887_59231189_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59226887 - 59231189
Intron Length:
4303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATCC
Flanking Amino Acid:
MLNPTNNFMLFYKDAKDWWL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78
0.63
0.8
72.4
31.3
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
69.1
0.58
1.6
79.51
35.5

Associated Gene:

Gene:
EDNRA
Ensembl Gene ID:
ENSAPLG00000012799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013358
59206131 - 59236238
30108