About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5924027_5924141_F


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
5924027 - 5924141

Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GGC|GTGAGTGTC

5'SS Class:
major

3'SS Sequence:
TCTTTTCATACAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTCAT

U12 Branch Point Sequence:
ACATTCTTGATC

Flanking Amino Acid:
LSALLLNGHGNLSTASRAGI

Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.2
0.38
1.3
66.6
39.6

Major BPS
100
1.24
0.5
100
0

Major PPT
85.2
0.79
0.8
80.7
30.4

Minor 5ss
32.7
-2
3.3
39
39.9

Minor BPS
63.1
0.4
1.2
63.59
36.3

Associated Gene:

Gene:
ENPEP

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

5895021 - 5929112
34092

5896279 - 5929112
32834