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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5926309_5927545_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5926309 - 5927545
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTAC
5'SS Class:
strong_major
3'SS Sequence:
GGATTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CAACCATGAAAG
Flanking Amino Acid:
ASVRNISLLDRYIKYVYDTN
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
76.4
28.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.3
0.46
0.9
67.1
40.2
Minor 5ss
35.1
-1.7
2.8
43.5
44.2
Minor BPS
43
-0.6
1.8
43.17
40.8

Associated Gene:

Gene:
ENPEP
Ensembl Gene ID:
ENSAPLG00000012392
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045830
5895021 - 5929112
34092