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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5926309_5928621_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5926309 - 5928621
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCAAAC
Flanking Amino Acid:
ASVRNISLLDRFTINDRTLG
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
76.4
28.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
35.1
-1.7
2.8
43.5
44.2
Minor BPS
50.1
-0
2
69.5
41.4

Associated Gene:

Gene:
ENPEP
Ensembl Gene ID:
ENSAPLG00000012392
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012977
5896279 - 5929112
32834