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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59263225_59264022_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59263225 - 59264022
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTCTTGTACA
Flanking Amino Acid:
LCCCPSWAMGEVLLFRCKLG
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.7
0.83
0.8
81.1
30.9
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
54.7
0.14
1.8
67.88
38.3

Associated Gene:

Gene:
TMEM184C
Ensembl Gene ID:
ENSAPLG00000013565
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014173
59260639 - 59269670
9032