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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59264098_59265010_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59264098 - 59265010
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
AAAATTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTGATTAATT
Flanking Amino Acid:
VVRPFTTIIALICELVDVYD
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
70.1
40
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.6
0.49
1
66.9
43.8
Minor 5ss
38.6
-1.3
2.7
49.9
40.1
Minor BPS
60
0.39
2
80.85
41.3

Associated Gene:

Gene:
TMEM184C
Ensembl Gene ID:
ENSAPLG00000013565
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014173
59260639 - 59269670
9032