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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59265105_59266645_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59265105 - 59266645
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTGTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
LVILNNMSQLFAMYCLVLFY
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
76.8
31.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.9
81.5
30.4
Minor 5ss
36.7
-1.5
2.9
47.4
36.1
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
TMEM184C
Ensembl Gene ID:
ENSAPLG00000013565
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014173
59260639 - 59269670
9032